Manuscripts & Presentations

Peer-reviewed articles, preprints, and conference contributions

2026

ScriptManager: a platform for scalable and reproducible high-resolution analysis of genomics datasets

Lang O, Beer B, Zhang D, LeSon C, Pugh BF, Lai WKM.

bioRxiv (2026)

bioRxiv

Genome-wide rotational and translational phasing of nucleosomes with human transcription factors

Chen H, Krebs JE, Lang O, Hu J, Melini D, Hyle J, Li C, Lai WKM, Pugh BF.

Mol Cell (2026)

DOI

2025

Adversarial attack of sequence-free enhancer prediction identifies chromatin architecture.

Gafur J, Lang O, Lai WKM

Bioinformatics. (2025)

DOI PubMed

2023

GenoPipe: identifying the genotype of origin within (epi)genomic datasets.

Lang O, Srivastava D, Pugh BF, Lai WKM

Nucleic Acids Res. (2023)

DOI PubMed

2022

ScriptManager: an interactive platform for reducing barriers to genomic analysis.

Lang O, Pugh BF, Lai WKM.

PEARC'22. 2022 Jul. (2022)

DOI ACM Digital Library

An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters.

Mittal C, Lang O, Lai WKM, Pugh BF.

Genes Dev. 2022 Sept. (2022)

DOI PubMed bioRxiv

2018

An Introduction to the Saccharomyces Genome Database (SGD).

Lang OW, Nash RS, Hellerstedt ST, Engel SR.

Methods Mol Biol. 2018;1757:21-30. (2018)

DOI PubMed

2017

Outreach and online training services at the Saccharomyces Genome Database.

MacPherson KA, Starr B, Wong ED, Dalusag KS, Hellerstedt ST, Lang O, Nash RS, Skrzypek MS, Engel SR, Cherry JM.

Database (Oxford). 2017 Jan 1;2017(1). (2017)

DOI PubMed

2026

Talk

A spatial and single-cell multi-omic approach to understanding peroxide stress response

Lang O, Gardner A, Lai WKM

2026 Center for Vertebrate Genomics & Center for Immunology Trainee Symposium

Ithaca, NY · May 2026

2025

Poster

A spatial and single-cell multi-omic approach to understanding the DNA damage response

Lang O, Gardner A, Lai WKM

Great Lakes Bioinformatics (GLBIO'25)

Minneapolis, MN · May 2025

2023

Poster

Interpreting transcription start site patterns in yeast

Lang O, Lai WKM, Pugh BF

Penn State's 39th Summer Symposium in Molecular Biology: Chromatin and Regulation of Gene Expression

State College, PA · August 2023

Poster

Interpreting transcription start site patterns in yeast

Lang O, Lai WKM, Pugh BF

Northeast Regional Yeast Meeting (NERY'23)

Ithaca, NY · July 2023

Poster

GenoPipe: identifying the genotype of origin within (epi)genomic datasets

Great Lakes Bioinformatics (GLBIO'23)

Montreal, QC · May 2023

2022

Talk

ScriptManager: an interactive platform for reducing barriers to genomic analysis

PEARC'22

Boston, MA · July 2022